PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g00300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 154aa    MW: 17641.5 Da    PI: 10.2041
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g00300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-202477356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 R++f++eq++ Le++F  ++ p  +++++LA++lgL+ rqV +WFqN+Ra+ k
  CA01g00300 24 MRRRFNDEQIKSLENMFSTESRPELRTKQQLARSLGLQPRQVAIWFQNKRARSK 77
                699*************************************************99 PP

2HD-ZIP_I/II103.41.9e-3325112390
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +rr+++eq+k+LE++F++e++ e + K++lar+Lglqprqva+WFqn+RAR k+kqlE +y++L+ +yd+l ++ e L+ke+e+L  +
   CA01g00300  25 RRRFNDEQIKSLENMFSTESRPELRTKQQLARSLGLQPRQVAIWFQNKRARSKSKQLELEYRMLQMSYDNLGSKYELLKKEHESLLLQ 112
                  79*********************************************************************************99755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-19781IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-181479IPR009057Homeodomain-like
PROSITE profilePS5007117.4591979IPR001356Homeobox domain
SMARTSM003895.4E-162183IPR001356Homeobox domain
PfamPF000465.5E-182477IPR001356Homeobox domain
CDDcd000861.66E-152580No hitNo description
PRINTSPR000314.0E-65059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000314.0E-65975IPR000047Helix-turn-helix motif
PfamPF021838.4E-1079113IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MPPTNSDIWG QSMSSSIKKC KDSMRRRFND EQIKSLENMF STESRPELRT KQQLARSLGL  60
QPRQVAIWFQ NKRARSKSKQ LELEYRMLQM SYDNLGSKYE LLKKEHESLL LQVIFIYSLS  120
FLGICVVGGG ANKGKFCWPI SVNCVTISSK SFC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092613e-97AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankHG9755203e-97HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552550.12e-75PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468979e-34ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLK4CPV92e-63K4CPV9_SOLLC; Uncharacterized protein
STRINGSolyc08g083130.2.15e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-30homeobox 7